Contains      

UniProtKB-A6NMZ7

Protein Collagen alpha-6(VI) chain
Gene COL6A6
Status Reviewed
Source Breast cancer xenografts; Breast tumor; Colorectal tumor; Liver; Liver tumor (HCC); Ovarian tumor; Pancreatic islets; Prostate tumor; Urine
Years 2007-2015

Glycosites

Site Identified Peptides Year(Publication ID)
198 DISMFSQnMTHIIK 2014(32);
198 DLSMFSQnMTHIIK 2009(64); 2012(48); 2014(33); 2015(unpublished);2015(unpublished);2015(unpublished);
239 LLDMSInGSEENFDYLK 2014(33);
239 DVIKYKEGAVDDIFVEACQGPSMADVVFLLDMSInG 2007(unpublished);
275 VGLVAYSnE 2014(33);
275 SnETKVINSL 2014(33);
275 VAYSnETKVIN 2014(33);
275 VGIVAYSnETK 2014(32);
275 VGLVAYSnETK 2009(64); 2012(48); 2013(34); 2014(22); 2014(33); 2015(unpublished);2007;
288 LSMGInKSE 2009(64);
288 SMGInKSEVL 2014(33);
288 VINSLSMGInK 2012(48); 2014(33); 2015(unpublished);
288 VINSLSMGInKSEVLQHIQNLSPR 2009(64); 2014(33);
298 VINSLSMGINKSEVLQHIQnLSPR 2009(64); 2014(33);
347 DSEDnVTK 2014(33); 2015(unpublished);
347 VTHRDSEDnVTKAAVNL 2014(33);
400 AHnQTFLK 2014(33);
400 ADLAAHnQTFL 2014(33);
400 TFADIAAHnQTFIK 2014(32); 2014(32);
400 TFADLAAHnQTFLK 2014(33); 2015(unpublished);2007(unpublished);2007;
400 TFADLAAHnQTFLKK 2014(33);
400 LKTFADLAAHnQTFLK 2014(33);
520 QMGGNTNTGAALnFTLSLLQK 2014(33);
576 AnQTQLR 2014(33);
576 EAnQTQLR 2012(48); 2014(22); 2014(33); 2015(unpublished);
576 AIGIKEAnQTQL 2014(33);
576 AIGIKEAnQTQLREIAGEEKRVY 2014(33);
761 VGVFGSnVTQLEE 2014(33);
761 SVGVFGSnVTQLEE 2014(33);
761 GSnVTQLEEISGRPEMVF 2014(33);
761 GSnVTQLEEISGRPEMVFY 2014(33);
761 SVGVFGSnVTQLEEISGRPEMVF 2014(33);
930 LnATAK 2015(unpublished);
930 SHDADKLnATAK 2014(33);
930 IVITDGESHDADKLnATAK 2014(33);
930 GVPQVLIVITDGESHDADKLnATAK 2009(64); 2014(33); 2015(unpublished);
988 GIFSDVTASVCnSSK 2009(64); 2012(48); 2014(32); 2014(32); 2014(33); 2015(unpublished);
1290 LWDTFQnKS 2009(64);
1290 LLDSLWDTFQnK 2015(unpublished);
1290 WDTFQnKSAARGKVVL 2009(64);
1290 GPSLLNANLLDSLWDTFQnK 2009(64); 2014(33); 2015(unpublished);
2034 FnLTTYR 2014(33);
2034 AEFnLTTYR 2012(48); 2014(33); 2015(unpublished);2015(unpublished);2015(unpublished);
2034 SPVRAEFnLTTYR 2014(33);

Sequence

1112131415161718191
MMLLILFLVIICSHISVNQDSGPEYADVVFLVDSSDRLGSKSFPFVKMFITKMISSLPIEADKYRVALAQYSDKLHSEFHLSTFKGRSPMLNHLRKNFGF
101111121131141151161171181191
IGGSLQIGKALQEAHRTYFSAPANGRDKKQFPPILVVLASSESEDNVEEASKALRKDGVKIISVGVQKASEENLKAMATSQFHFNLRTVRDLSMFSQNMT
201211221231241251261271281291
HIIKDVIKYKEGAVDDIFVEACQGPSMADVVFLLDMSINGSEENFDYLKGFLEESVSALDIKENCMRVGLVAYSNETKVINSLSMGINKSEVLQHIQNLS
301311321331341351361371381391
PRTGKAYTGAAIKKLRKEVFSARNGSRKNQGVPQIAVLVTHRDSEDNVTKAAVNLRREGVTIFTLGIEGASDTQLEKIASHPAEQYVSKLKTFADLAAHN
401411421431441451461471481491
QTFLKKLRNQITHTVSVFSERTETLKSGCVDTEEADIYLLIDGSGSTQATDFHEMKTFLSEVVGMFNIAPHKVRVGAVQYADSWDLEFEINKYSNKQDLG
501511521531541551561571581591
KAIENIRQMGGNTNTGAALNFTLSLLQKAKKQRGNKVPCHLVVLTNGMSKDSILEPANRLREEHIRVYAIGIKEANQTQLREIAGEEKRVYYVHDFDALK
601611621631641651661671681691
DIRNQVVQEICTEEACKEMKADIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDINKEEFQLNRFMSQSDISNAIDQMAHIGQTTL
701711721731741751761771781791
TGSALSFVSQYFSPTKGARPNIRKFLILITDGEAQDIVKEPAVVLRQEGVIIYSVGVFGSNVTQLEEISGRPEMVFYVENFDILQRIEDDLVFGICSPRE
801811821831841851861871881891
ECKRIEVLDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLFYLDDFGTKLEVISVLQNDQAMGGSTYTAEALGFSDHMFT
901911921931941951961971981991
EARGSRLNKGVPQVLIVITDGESHDADKLNATAKALRDKGILVLAVGIDGANPVELLAMAGSSDKYFFVETFGGLKGIFSDVTASVCNSSKVDCEIDKVD
1001101110211031104110511061107110811091
LVFLMDGSTSIQPNDFKKMKEFLASVVQDFDVSLNRVRIGAAQFSDTYHPEFPLGTFIGEKEISFQIENIKQIFGNTHIGAALREVEHYFRPDMGSRINT
1101111111211131114111511161117111811191
GTPQVLLVLTDGQSQDEVAQAAEALRHRGIDIYSVGIGDVDDQQLIQITGTAEKKLTVHNFDELKKVNKRIVRNICTTAGESNCFVDVVVGFDVSTQEKG
1201121112211231124112511261127112811291
QTLLEGQPWMETYLQDILRAISSLNGVSCEVGTETQVSVAFQVTNAMEKYSPKFEIYSENILNSLKDITVKGPSLLNANLLDSLWDTFQNKSAARGKVVL
1301131113211331134113511361137113811391
LFSDGLDDDVEKLEQKSDELRKEGLNALITVALDGPADSSDLADLPYIEFGKGFEYRTQLSIGMRELGSRLSKQLVNVAERTCCCLFCKCIGGDGTMGDP
1401141114211431144114511461147114811491
GPPGKRGPPGFKGSEGYLGEEGIAGERGAPGPVGEQGTKGCYGTKGPKGNRGLNGQEGEVGENGIDGLNGEQGDNGLPGRKGEKGDEGSQGSPGKRGTPG
1501151115211531154115511561157115811591
DRGAKGLRGDPGAPGVDSSIEGPTGLKGERGRQGRRGWPGPPGTPGSRRKTAAHGRRGHTGPQGTAGIPGPDGLEGSLGLKGPQGPRGEAGVKGEKGGVG
1601161116211631164116511661167116811691
SKGPQGPPGPGGEAGNQGRLGSQGNKGEPGDLGEKGAVGFPGPRGLQGNDGSPGYGSVGRKGAKGQEGFPGESGPKGEIGDPGGPGETGLKGARGKMISA
1701171117211731174117511761177117811791
GLPGEMGSPGEPGPPGRKGVKGAKGLASFSTCELIQYVRDRSPGRHGKPECPVHPTELVFALDHSRDVTEQEFERMKEMMAFLVRDIKVRENSCPVGAHI
1801181118211831184118511861187118811891
AILSYNSHARHLVRFSDAYKKSQLLREIETIPYERSSASREIGRAMRFISRNVFKRTLPGAHTRKIATFFSSGQSADAHSITTAAMEFGALEIIPVVITF
1901191119211931194119511961197119811991
SNVPSVRRAFAIDDTGTFQVIVVPSGADYIPALERLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDASRNMGSAEFEDIRAFLGALLDHFEITPE
2001201120212031204120512061207120812091
PETSVTGDRVALLSHAPPDFLPNTQKSPVRAEFNLTTYRSKRLMKRHVHESVKQLNGDAFIGHALQWTLDNVFLSTPNLRRNKVIFVISAGETSHLDGEI
2101211121212131214121512161217121812191
LKKESLRAKCQGYALFVFSLGPIWDDKELEDLASHPLDHHLVQLGRIHKPDHSYGVKFVKSFINSIRRAINKYPPINLKIKCNRLNSIDPKQPPRPFRSF
2201221122212231224122512261
VPGPLKATLKEDVLQKAKFFQDKKYLSRVARSGRDDAIQNFMRSTSHTFKNGRMIESAPKQHD

Reference

ID Publication
22Nicastri A, Gaspari M, Sacco R, Elia L, Gabriele C, Romano R, Rizzuto A, Cuda G: N-Glycoprotein Analysis Discovers New Up-Regulated Glycoproteins in Colorectal Cancer Tissue. Journal of Proteome Research 2014, 13:4932-4941.
32Zhang Z, Sun Z, Zhu J, Liu J, Huang G, Ye M, Zou H: High-Throughput Determination of the Site-Specific N-Sialoglycan Occupancy Rates by Differential Oxidation of Glycoproteins Followed with Quantitative Glycoproteomics Analysis. Analytical Chemistry 2014, 86:9830-9837.
33Zhu J, Sun Z, Cheng K, Chen R, Ye M, Xu B, Sun D, Wang L, Liu J, Wang F, Zou H: Comprehensive Mapping of Protein N-Glycosylation in Human Liver by Combining Hydrophilic Interaction Chromatography and Hydrazide Chemistry. Journal of Proteome Research 2014, 13:1713-1721.
34Sun S, Zhang B, Aiyetan P, Zhou J-Y, Shah P, Yang W, Levine DA, Zhang Z, Chan DW, Zhang H: Analysis of N-glycoproteins using Genomic N-glycosite Prediction. Journal of Proteome Research 2013, 12:5609-5615.
48Danzer C, Eckhardt K, Schmidt A, Fankhauser N, Ribrioux S, Wollscheid B, Mueller L, Schiess R, Zuellig R, Lehmann R, et al: Comprehensive Description of the N-Glycoproteome of Mouse Pancreatic beta-Cells and Human Islets. Journal of Proteome Research 2012, 11:1598-1608.
64Chen R, Jiang X, Sun D, Han G, Wang F, Ye M, Wang L, Zou H: Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry. J Proteome Res 2009, 8:651-661.